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    LOC4343089 KH domain-containing protein HEN4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343089, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4343089
    Gene description
    KH domain-containing protein HEN4
    Locus tag
    OSNPB_070439100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 3.2), flowers (RPKM 3.0) and 1 other tissue See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (14931555..14938523, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (14774622..14781606, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein PHOSPHATE STARVATION RESPONSE 2-like Neighboring gene uncharacterized LOC9269557 Neighboring gene uncharacterized LOC136357415 Neighboring gene uncharacterized LOC112939695

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    KH domain-containing protein HEN4
    Names
    OSJNBa0026I22.25
    Os07g0439100
    P0443H10.10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      14931555..14938523 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066312180.1 → XP_066168277.1  KH domain-containing protein HEN4 isoform X4

      UniProtKB/TrEMBL
      A2YKS8

    2. XM_066312179.1 → XP_066168276.1  KH domain-containing protein HEN4 isoform X3

      UniProtKB/TrEMBL
      A2YKS8

    3. XM_026026786.2 → XP_025882571.1  KH domain-containing protein HEN4 isoform X2

      UniProtKB/TrEMBL
      A2YKS8
      Conserved Domains (2) summary
      cd02396
      Location:310 → 379
      PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
      pfam00013
      Location:400 → 469
      KH_1; KH domain

    4. XM_026026784.2 → XP_025882569.1  KH domain-containing protein HEN4 isoform X1

      UniProtKB/TrEMBL
      A2YKS8
      Conserved Domains (1) summary
      cl00098
      Location:311 → 376
      KH-I; K homology (KH) RNA-binding domain, type I
    Nucleotide Protein
    Heading Accession and Version

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