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    LOC4339820 putative RING-H2 finger protein ATL12 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339820, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4339820
    Gene description
    putative RING-H2 finger protein ATL12
    Locus tag
    OSNPB_050596500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (29910250..29911854)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (29718188..29719790)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281154 Neighboring gene uncharacterized LOC4339819 Neighboring gene structural maintenance of chromosomes protein 5 Neighboring gene peptidyl-tRNA hydrolase, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    putative RING-H2 finger protein ATL12
    Names
    Os05g0596500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      29910250..29911854
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782493.3 → XP_015637979.1  putative RING-H2 finger protein ATL12

      UniProtKB/TrEMBL
      A0A0N7KLD1, Q5KQG6, Q5TKE9
      Conserved Domains (1) summary
      cd16486
      Location:123 → 166
      mRING-H2-C3H2C2D_ZSWM2; Modified RING finger, H2 subclass (C3H2C2D-type), found in zinc finger SWIM domain-containing protein 2 (ZSWIM2) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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