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    LOC4330904 uncharacterized LOC4330904 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330904, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4330904
    Gene description
    uncharacterized LOC4330904
    Locus tag
    OSNPB_020777100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1534_E09.9-1; OJ1534_E09.9-2
    Expression
    Ubiquitous expression in roots before flowering (RPKM 18.4), roots after flowering (RPKM 17.1) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (33350902..33365671, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (32855337..32870414, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene replication protein A 70 kDa DNA-binding subunit A-like Neighboring gene growth-regulating factor 1-like Neighboring gene LRR receptor-like serine/threonine-protein kinase ERECTA Neighboring gene protein OPAQUE1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4330904
    Names
    DENN (AEX-3) domain-containing protein-like
    Os02g0777100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      33350902..33365671 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770364.3 → XP_015625850.1  uncharacterized protein LOC4330904

      UniProtKB/TrEMBL
      A0A0P0VQ58, B9F3I7, Q6ZGD1
      Conserved Domains (3) summary
      smart00799
      Location:526 → 706
      DENN; Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN
      pfam03456
      Location:164 → 240
      uDENN; uDENN domain
      cl04084
      Location:775 → 819
      dDENN; dDENN domain

    2. XM_066307392.1 → XP_066163489.1  uncharacterized protein LOC4330904

      UniProtKB/TrEMBL
      A0A0P0VQ58, B9F3I7, Q6ZGD1

    3. XM_015770362.3 → XP_015625848.1  uncharacterized protein LOC4330904

      UniProtKB/TrEMBL
      A0A0P0VQ58, B9F3I7, Q6ZGD1
      Conserved Domains (3) summary
      smart00799
      Location:526 → 706
      DENN; Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN
      pfam03456
      Location:164 → 240
      uDENN; uDENN domain
      cl04084
      Location:775 → 819
      dDENN; dDENN domain

    4. XM_015770365.3 → XP_015625851.1  uncharacterized protein LOC4330904

      UniProtKB/TrEMBL
      A0A0P0VQ58, B9F3I7, Q6ZGD1
      Conserved Domains (3) summary
      smart00799
      Location:526 → 706
      DENN; Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN
      pfam03456
      Location:164 → 240
      uDENN; uDENN domain
      cl04084
      Location:775 → 819
      dDENN; dDENN domain

    5. XM_066307393.1 → XP_066163490.1  uncharacterized protein LOC4330904

      UniProtKB/TrEMBL
      A0A0P0VQ58, B9F3I7, Q6ZGD1

    6. XM_066307391.1 → XP_066163488.1  uncharacterized protein LOC4330904

      UniProtKB/TrEMBL
      A0A0P0VQ58, B9F3I7, Q6ZGD1

    7. XM_026022933.2 → XP_025878718.1  uncharacterized protein LOC4330904

      UniProtKB/TrEMBL
      A0A0P0VQ58, B9F3I7, Q6ZGD1
      Conserved Domains (3) summary
      smart00799
      Location:526 → 706
      DENN; Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN
      pfam03456
      Location:164 → 240
      uDENN; uDENN domain
      cl04084
      Location:775 → 819
      dDENN; dDENN domain

    8. XM_015770363.3 → XP_015625849.1  uncharacterized protein LOC4330904

      UniProtKB/TrEMBL
      A0A0P0VQ58, B9F3I7, Q6ZGD1
      Conserved Domains (3) summary
      smart00799
      Location:526 → 706
      DENN; Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN
      pfam03456
      Location:164 → 240
      uDENN; uDENN domain
      cl04084
      Location:775 → 819
      dDENN; dDENN domain

    9. XM_015770357.3 → XP_015625843.1  uncharacterized protein LOC4330904

      UniProtKB/TrEMBL
      A0A0P0VQ58, B9F3I7, Q6ZGD1
      Conserved Domains (3) summary
      smart00799
      Location:526 → 706
      DENN; Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN
      pfam03456
      Location:164 → 240
      uDENN; uDENN domain
      cl04084
      Location:775 → 819
      dDENN; dDENN domain

    10. XM_026022932.2 → XP_025878717.1  uncharacterized protein LOC4330904

      UniProtKB/TrEMBL
      A0A0P0VQ58, B9F3I7, Q6ZGD1
      Conserved Domains (3) summary
      smart00799
      Location:526 → 706
      DENN; Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN
      pfam03456
      Location:164 → 240
      uDENN; uDENN domain
      cl04084
      Location:775 → 819
      dDENN; dDENN domain

    11. XM_015770360.3 → XP_015625846.1  uncharacterized protein LOC4330904

      UniProtKB/TrEMBL
      A0A0P0VQ58, B9F3I7, Q6ZGD1
      Conserved Domains (3) summary
      smart00799
      Location:526 → 706
      DENN; Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN
      pfam03456
      Location:164 → 240
      uDENN; uDENN domain
      cl04084
      Location:775 → 819
      dDENN; dDENN domain

    12. XM_015770361.3 → XP_015625847.1  uncharacterized protein LOC4330904

      UniProtKB/TrEMBL
      A0A0P0VQ58, B9F3I7, Q6ZGD1
      Conserved Domains (3) summary
      smart00799
      Location:526 → 706
      DENN; Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN
      pfam03456
      Location:164 → 240
      uDENN; uDENN domain
      cl04084
      Location:775 → 819
      dDENN; dDENN domain

    RNA

    1. XR_003240558.2 RNA Sequence

    2. XR_010739287.1 RNA Sequence

    3. XR_001543454.3 RNA Sequence

    4. XR_010739286.1 RNA Sequence

    5. XR_010739284.1 RNA Sequence

    6. XR_010739285.1 RNA Sequence

    7. XR_003240557.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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