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    GLYI-11 lactoylglutathione lyase-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344858, updated on 16-Jul-2024

    Summary

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    Gene symbol
    GLYI-11
    Gene description
    lactoylglutathione lyase-like
    Locus tag
    OSNPB_080191700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PP33; glx-I; OsGLYI11; OsGLYI-11; glyoxalase
    Expression
    Ubiquitous expression in flower buds (RPKM 1575.6), flowers (RPKM 761.7) and 6 other tissues See more
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    Genomic context

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    See GLYI-11 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (5423772..5427657, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (5373355..5377162, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene autophagy-related protein 8C-like Neighboring gene uncharacterized LOC136351338 Neighboring gene tyrosine--tRNA ligase 1, cytoplasmic Neighboring gene pentatricopeptide repeat-containing protein At3g59040

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Overexpression of a glyoxalase gene, OsGly I, improves abiotic stress tolerance and grain yield in rice (Oryza sativa L.). Zeng Z, et al. Plant Physiol Biochem, 2016 Dec. PMID 27639962
    2. A 33-kDa allergen from rice (Oryza sativa L. Japonica). cDNA cloning, expression, and identification as a novel glyoxalase I. Usui Y, et al. J Biol Chem, 2001 Apr 6. PMID 11139585
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data indicate that rice glyoxalase I (OsGly I) was ubiquitously expressed in root, stem, leaf, leaf sheath and spikelet with varying abundance.
      Title: Overexpression of a glyoxalase gene, OsGly I, improves abiotic stress tolerance and grain yield in rice (Oryza sativa L.).
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lactoylglutathione lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lactoylglutathione lyase
    Names
    Aldoketomutase
    Allergen Glb33
    Glx I
    Ketone-aldehyde mutase
    LOC_Os08g09250
    Methylglyoxalase
    OSJNBa0056O06.9-1
    S-D-lactoylglutathione methylglyoxal lyase
    glyoxalase 1
    glyoxalase I
    glyoxylase I 11
    NP_001390445.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403516.1 → NP_001390445.1  lactoylglutathione lyase

      Status: VALIDATED

      Source sequence(s)
      AU166168, CF312831, EF122487
      UniProtKB/Swiss-Prot
      Q0J7H9, Q948T6, Q9ZWJ2
      UniProtKB/TrEMBL
      A0A5B8HCC6, A0A9E7V455, A2YS08, A3BQD6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      5423772..5427657 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q948T6.2 GenPept UniProtKB/Swiss-Prot:Q948T6

    Gene LinkOut

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