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    LOC4351457 BTB/POZ domain and ankyrin repeat-containing protein NH5.2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351457, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4351457
    Gene description
    BTB/POZ domain and ankyrin repeat-containing protein NH5.2-like
    Locus tag
    OSNPB_120138500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    NH5; NH5.2
    Expression
    Biased expression in flowers (RPKM 15.4), flower buds (RPKM 11.2) and 1 other tissue See more
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    Genomic context

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    See LOC4351457 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (1869398..1872461)

    Chromosome 12 - NC_029267.1Genomic Context describing neighboring genes Neighboring gene scarecrow-like protein 3 Neighboring gene scarecrow-like protein 3 Neighboring gene protein STRICTOSIDINE SYNTHASE-LIKE 10 Neighboring gene 2-isopropylmalate synthase A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029267.1 Chromosome 12 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in plant organ development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BTB/POZ domain and ankyrin repeat-containing protein NH5.2
    Names
    LOC_Os12g04410
    regulatory protein NPR6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423314.1 → NP_001410243.1  BTB/POZ domain and ankyrin repeat-containing protein NH5.2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK060933, AP014968
      UniProtKB/Swiss-Prot
      A0A0P0Y6T3, Q0IQ83, Q2QXZ2
      UniProtKB/TrEMBL
      A3C8I5

    2. NM_001423315.1 → NP_001410244.1  BTB/POZ domain and ankyrin repeat-containing protein NH5.2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK060933

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029267.1 Reference IRGSP-1.0 Primary Assembly

      Range
      1869398..1872461
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764138.2 → XP_015619624.1  BTB/POZ domain and ankyrin repeat-containing protein NH5.2

      UniProtKB/Swiss-Prot
      Q2QXZ2
      Conserved Domains (4) summary
      sd00045
      Location:308 → 336
      ANK; ANK repeat [structural motif]
      pfam11900
      Location:225 → 260
      DUF3420; Domain of unknown function (DUF3420)
      cl38908
      Location:8 → 184
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
      pfam12796
      Location:288 → 369
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2QXZ2.1 GenPept UniProtKB/Swiss-Prot:Q2QXZ2

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