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    LOC4341902 probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341902, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4341902
    Gene description
    probable cadmium/zinc-transporting ATPase HMA1, chloroplastic
    Locus tag
    OSNPB_060690700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0532H03.5; P0532H03.6
    Expression
    Broad expression in roots after flowering (RPKM 74.5), leaves after flowering (RPKM 26.8) and 6 other tissues See more
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    Genomic context

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    See LOC4341902 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (29655685..29664179, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (28789012..28799807, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4341899 Neighboring gene cysteine-rich receptor-like protein kinase 10 Neighboring gene uncharacterized LOC107281431 Neighboring gene probable cadmium/zinc-transporting ATPase HMA1, chloroplastic Neighboring gene pentatricopeptide repeat-containing protein At5g65560

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATPase-coupled monoatomic cation transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in monoatomic cation transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable cadmium/zinc-transporting ATPase HMA1, chloroplastic
    Names
    Os06g0690700
    Os06g0690800
    P0661G04.38
    P0661G04.39
    putative cadmium resistance protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      29655685..29664179 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788227.3 → XP_015643713.1  probable cadmium/zinc-transporting ATPase HMA1, chloroplastic

      UniProtKB/TrEMBL
      B8B1T9, Q5Z686, Q654Y9
      Conserved Domains (1) summary
      TIGR01512
      Location:182 → 783
      ATPase-IB2_Cd; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
    Nucleotide Protein
    Heading Accession and Version

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