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    LOC4330226 14 kDa proline-rich protein DC2.15 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330226, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330226
    Gene description
    14 kDa proline-rich protein DC2.15
    Locus tag
    OSNPB_020662000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RCc3; OJ1001_D02.1
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    Genomic context

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    See LOC4330226 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (27291314..27292167)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (26804972..26805823)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene probable lipid phosphate phosphatase beta Neighboring gene vesicle-associated protein 1-3 Neighboring gene putative lipid-binding protein AIR1 Neighboring gene uncharacterized LOC4330228

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of a rice gene family encoding root-specific proteins. Xu Y, et al. Plant Mol Biol, 1995 Jan. PMID 7888615
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    14 kDa proline-rich protein DC2.15
    Names
    Os02g0662000
    P0516F12.19
    root-specific protein RCc3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      27291314..27292167
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767586.3 → XP_015623072.1  14 kDa proline-rich protein DC2.15

      UniProtKB/TrEMBL
      A2X812, Q0DYX4, Q40721, Q6EUJ6, Q6H6L9
      Conserved Domains (1) summary
      cd01958
      Location:49 → 133
      HPS_like; Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members ...
    Nucleotide Protein
    Heading Accession and Version

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