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    LOC4325477 receptor-like protein 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325477, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325477
    Gene description
    receptor-like protein 4
    Locus tag
    OSNPB_010140400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 5.4), flower buds (RPKM 4.9) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (2138872..2144946)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (2131133..2137294)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354996 Neighboring gene protein ASPARTIC PROTEASE IN GUARD CELL 1 Neighboring gene large ribosomal subunit protein uL24z Neighboring gene putative AP2/ERF and B3 domain-containing protein Os01g0140700 Neighboring gene nucleolar protein 58-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    receptor-like protein 4
    Names
    Os01g0140400
    P0480E02.18-1
    probable LRR receptor-like serine/threonine-protein kinase PAM74
    senescence-induced receptor-like serine/threonine kinase -like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      2138872..2144946
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768709.3 → XP_015624195.1  receptor-like protein 4

      UniProtKB/TrEMBL
      A0A0P0UXT0, A0A8J8YF28, B8AD63, Q0JQT4, Q5ZDH7
      Conserved Domains (5) summary
      sd00033
      Location:433 → 455
      LRR_RI; leucine-rich repeat [structural motif]
      pfam11721
      Location:211 → 337
      Malectin; Di-glucose binding within endoplasmic reticulum
      pfam12819
      Location:38 → 373
      Malectin_like; Carbohydrate-binding protein of the ER
      pfam13855
      Location:456 → 512
      LRR_8; Leucine rich repeat
      cl00467
      Location:497 → 570
      Ntn_hydrolase; The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a ...
    Nucleotide Protein
    Heading Accession and Version

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