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    LOC4341846 BEACH domain-containing protein B [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341846, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341846
    Gene description
    BEACH domain-containing protein B
    Locus tag
    OSNPB_060678650
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    LvsC-like
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    Genomic context

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    See LOC4341846 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    40
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (29075264..29100821, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (28208627..28234243, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4341843 Neighboring gene solanesyl-diphosphate synthase 1, mitochondrial-like Neighboring gene U5 spliceosomal RNA Neighboring gene L-ascorbate oxidase homolog Neighboring gene anaphase-promoting complex subunit 8-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BEACH domain-containing protein B
    Names
    Os06g0678650
    Os06g0678651
    Os06g0678700
    P0710B08.39
    P0710B08.41

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      29075264..29100821 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026026160.2 → XP_025881945.1  BEACH domain-containing protein B isoform X2

      UniProtKB/TrEMBL
      B9FQH6
      Conserved Domains (7) summary
      cd01201
      Location:2375 → 2521
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      sd00039
      Location:2939 → 2974
      7WD40; WD40 repeat [structural motif]
      pfam02138
      Location:2555 → 2832
      Beach; Beige/BEACH domain
      pfam15787
      Location:1312 → 1575
      DUF4704; Domain of unknown function (DUF4704)
      pfam16057
      Location:2218 → 2274
      DUF4800; Domain of unknown function (DUF4800)
      cl22861
      Location:1074 → 1245
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
      cl29593
      Location:2940 → 3182
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_026026161.2 → XP_025881946.1  BEACH domain-containing protein B isoform X5

      UniProtKB/TrEMBL
      B9FQH6
      Conserved Domains (5) summary
      cd01201
      Location:2376 → 2522
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      pfam02138
      Location:2557 → 2746
      Beach; Beige/BEACH domain
      pfam15787
      Location:1308 → 1583
      DUF4704; Domain of unknown function (DUF4704)
      pfam16057
      Location:2219 → 2275
      DUF4800; Domain of unknown function (DUF4800)
      cl22861
      Location:1075 → 1246
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

    3. XM_026026162.2 → XP_025881947.1  BEACH domain-containing protein B isoform X5

      UniProtKB/TrEMBL
      B9FQH6
      Conserved Domains (5) summary
      cd01201
      Location:2376 → 2522
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      pfam02138
      Location:2557 → 2746
      Beach; Beige/BEACH domain
      pfam15787
      Location:1308 → 1583
      DUF4704; Domain of unknown function (DUF4704)
      pfam16057
      Location:2219 → 2275
      DUF4800; Domain of unknown function (DUF4800)
      cl22861
      Location:1075 → 1246
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

    4. XM_015788178.3 → XP_015643664.1  BEACH domain-containing protein B isoform X3

      UniProtKB/TrEMBL
      B9FQH6
      Conserved Domains (8) summary
      COG2319
      Location:2944 → 3072
      WD40; WD40 repeat [General function prediction only]
      cd01201
      Location:2376 → 2522
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      pfam02138
      Location:2557 → 2833
      Beach; Beige/BEACH domain
      pfam15787
      Location:1308 → 1583
      DUF4704; Domain of unknown function (DUF4704)
      pfam16057
      Location:2219 → 2275
      DUF4800; Domain of unknown function (DUF4800)
      sd00039
      Location:2940 → 2975
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:2916 → 3072
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cl22861
      Location:1075 → 1246
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

    5. XM_026026159.2 → XP_025881944.1  BEACH domain-containing protein B isoform X1

      UniProtKB/TrEMBL
      B9FQH6
      Conserved Domains (7) summary
      cd01201
      Location:2376 → 2522
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      sd00039
      Location:2940 → 2975
      7WD40; WD40 repeat [structural motif]
      pfam02138
      Location:2556 → 2833
      Beach; Beige/BEACH domain
      pfam15787
      Location:1313 → 1576
      DUF4704; Domain of unknown function (DUF4704)
      pfam16057
      Location:2219 → 2275
      DUF4800; Domain of unknown function (DUF4800)
      cl22861
      Location:1075 → 1246
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
      cl29593
      Location:2941 → 3183
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    6. XM_015788179.3 → XP_015643665.1  BEACH domain-containing protein B isoform X4

      UniProtKB/TrEMBL
      B9FQH6
      Conserved Domains (5) summary
      cd01201
      Location:2376 → 2522
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      pfam02138
      Location:2557 → 2783
      Beach; Beige/BEACH domain
      pfam15787
      Location:1308 → 1583
      DUF4704; Domain of unknown function (DUF4704)
      pfam16057
      Location:2219 → 2275
      DUF4800; Domain of unknown function (DUF4800)
      cl22861
      Location:1075 → 1246
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

    7. XM_026026164.2 → XP_025881949.1  BEACH domain-containing protein B isoform X6

      UniProtKB/TrEMBL
      B9FQH6
      Conserved Domains (5) summary
      cd01201
      Location:2376 → 2522
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      pfam02138
      Location:2557 → 2698
      Beach; Beige/BEACH domain
      pfam15787
      Location:1308 → 1583
      DUF4704; Domain of unknown function (DUF4704)
      pfam16057
      Location:2219 → 2275
      DUF4800; Domain of unknown function (DUF4800)
      cl22861
      Location:1075 → 1246
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

    8. XM_026026163.2 → XP_025881948.1  BEACH domain-containing protein B isoform X6

      UniProtKB/TrEMBL
      B9FQH6
      Conserved Domains (5) summary
      cd01201
      Location:2376 → 2522
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      pfam02138
      Location:2557 → 2698
      Beach; Beige/BEACH domain
      pfam15787
      Location:1308 → 1583
      DUF4704; Domain of unknown function (DUF4704)
      pfam16057
      Location:2219 → 2275
      DUF4800; Domain of unknown function (DUF4800)
      cl22861
      Location:1075 → 1246
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

    9. XM_026026165.2 → XP_025881950.1  BEACH domain-containing protein B isoform X7

      UniProtKB/TrEMBL
      B9FQH6
      Conserved Domains (5) summary
      cd01201
      Location:2376 → 2522
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      pfam02138
      Location:2557 → 2697
      Beach; Beige/BEACH domain
      pfam15787
      Location:1308 → 1583
      DUF4704; Domain of unknown function (DUF4704)
      pfam16057
      Location:2219 → 2275
      DUF4800; Domain of unknown function (DUF4800)
      cl22861
      Location:1075 → 1246
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

    10. XM_015788180.3 → XP_015643666.1  BEACH domain-containing protein B isoform X7

      UniProtKB/TrEMBL
      B9FQH6
      Conserved Domains (5) summary
      cd01201
      Location:2376 → 2522
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      pfam02138
      Location:2557 → 2697
      Beach; Beige/BEACH domain
      pfam15787
      Location:1308 → 1583
      DUF4704; Domain of unknown function (DUF4704)
      pfam16057
      Location:2219 → 2275
      DUF4800; Domain of unknown function (DUF4800)
      cl22861
      Location:1075 → 1246
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    Nucleotide Protein
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