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    LOC4347547 probable inactive beta-glucosidase 33 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347547, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4347547
    Gene description
    probable inactive beta-glucosidase 33
    Locus tag
    OSNPB_090511900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    BGLU33; Os9bglu33
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    Genomic context

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    See LOC4347547 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (24318467..24325784, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (19908672..19914536, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene beta-glucosidase 31-like Neighboring gene beta-glucosidase 32-like Neighboring gene uncharacterized LOC4347548 Neighboring gene uncharacterized LOC107277245 Neighboring gene uncharacterized LOC4347549

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-glucosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable inactive beta-glucosidase 33
    Names
    LOC_Os09g33710

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422813.1 → NP_001409742.1  probable inactive beta-glucosidase 33 precursor

      Status: VALIDATED

      Source sequence(s)
      AK066336, CI095653
      UniProtKB/Swiss-Prot
      A0A0P0XPL7, B7EC24, Q0J0G1
      UniProtKB/TrEMBL
      A2Z317

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      24318467..24325784 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066303888.1 → XP_066159985.1  probable inactive beta-glucosidase 33 isoform X3

      UniProtKB/TrEMBL
      A2Z317

    2. XM_066303886.1 → XP_066159983.1  probable inactive beta-glucosidase 33 isoform X1

      UniProtKB/TrEMBL
      A2Z317

    3. XM_066303889.1 → XP_066159986.1  probable inactive beta-glucosidase 33 isoform X4

      UniProtKB/TrEMBL
      A2Z317

    4. XM_066303887.1 → XP_066159984.1  probable inactive beta-glucosidase 33 isoform X2

      UniProtKB/Swiss-Prot
      A0A0P0XPL7, B7EC24, Q0J0G1
      UniProtKB/TrEMBL
      A2Z317
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0J0G1.2 GenPept UniProtKB/Swiss-Prot:Q0J0G1

    Gene LinkOut

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