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    LOC4328196 probable ATP synthase 24 kDa subunit, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328196, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4328196
    Gene description
    probable ATP synthase 24 kDa subunit, mitochondrial
    Locus tag
    OSNPB_020131300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1007_D04.18
    Expression
    Ubiquitous expression in flowers (RPKM 289.0), flower buds (RPKM 248.5) and 6 other tissues See more
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    Genomic context

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    See LOC4328196 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (1644782..1648954)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (1637564..1641784)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280121 Neighboring gene uncharacterized LOC4328194 Neighboring gene uncharacterized LOC9267563 Neighboring gene uncharacterized LOC4328197 Neighboring gene nuclear transport factor 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in pollen development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable ATP synthase 24 kDa subunit, mitochondrial
    Names
    ATP synthase
    Os02g0131300
    mitochondrial ATP synthase
    putative ATP synthase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      1644782..1648954
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771786.3 → XP_015627272.1  probable ATP synthase 24 kDa subunit, mitochondrial

      UniProtKB/TrEMBL
      A2X0J1, A3A2T4, Q0E484, Q6ZG90
      Conserved Domains (1) summary
      pfam15704
      Location:33 → 219
      Mt_ATP_synt; Mitochondrial ATP synthase subunit
    Nucleotide Protein
    Heading Accession and Version

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