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    LOC4347014 probable ubiquitin receptor RAD23 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347014, updated on 16-Jul-2024

    Summary

    Gene symbol
    LOC4347014
    Gene description
    probable ubiquitin receptor RAD23
    Locus tag
    OSNPB_090407200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RAD23; osRAD23; OsJ_29306; P0465E03.1; OJ1261_A08.46; OJ1261_A08.49
    Expression
    Ubiquitous expression in roots before flowering (RPKM 25.8), flowers (RPKM 24.0) and 6 other tissues See more
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    Genomic context

    See LOC4347014 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (18740640..18744596)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (14362998..14366949)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112936372 Neighboring gene uncharacterized LOC112936409 Neighboring gene uncharacterized LOC4347015 Neighboring gene DNA mismatch repair protein MSH6

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables damaged DNA binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables proteasome binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in nucleotide-excision repair IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    probable ubiquitin receptor RAD23
    Names
    LOC_Os09g24200
    Probable DNA repair protein RAD23
    putative RAD23 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403796.1NP_001390725.1  probable ubiquitin receptor RAD23 isoform 1

      Status: VALIDATED

      Source sequence(s)
      CB674664, CB674665, CI163634, CI605409
      UniProtKB/Swiss-Prot
      Q0J1W7, Q40742, Q69MY0
      UniProtKB/TrEMBL
      A2Z142
    2. NM_001403797.1NP_001390726.1  probable ubiquitin receptor RAD23 isoform 2

      Status: VALIDATED

      Source sequence(s)
      CB674664, CB674665, CF319557, CI163634, CI605409

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      18740640..18744596
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)