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    LOC4342643 hydroxyproline O-galactosyltransferase GALT6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342643, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4342643
    Gene description
    hydroxyproline O-galactosyltransferase GALT6
    Locus tag
    OSNPB_070194800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1715_A07.11-1; OJ1715_A07.11-2
    Expression
    Broad expression in roots before flowering (RPKM 16.5), mature seeds (RPKM 5.7) and 6 other tissues See more
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    Genomic context

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    See LOC4342643 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (5189936..5194279, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (5128640..5133137, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9267482 Neighboring gene probable prolyl 4-hydroxylase 6 Neighboring gene ras-related protein RABE1d Neighboring gene hydroxyproline O-galactosyltransferase GALT6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hexosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hydroxyproline O-galactosyltransferase GALT6
    Names
    Os07g0194800
    galactosyltransferase family-like protein
    galactosyltransferase-like
    probable beta-1,3-galactosyltransferase 19

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      5189936..5194279 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789197.3 → XP_015644683.1  hydroxyproline O-galactosyltransferase GALT6

      UniProtKB/TrEMBL
      A0A0P0X3H2, A2YJ38, B9FW01, Q6ZKZ6
      Conserved Domains (1) summary
      PLN03133
      Location:150 → 655
      PLN03133; beta-1,3-galactosyltransferase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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