LOC4337574 ABC transporter D family member 1 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4337574
Gene description: ABC transporter D family member 1
Locus tag: OSNPB_050107600
Gene type: protein coding
RefSeq status: MODEL
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: pmp2
Expression: Broad expression in flowers (RPKM 29.3), flower buds (RPKM 24.7) and 6 other tissues See more
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Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	5	NC_029260.1 (421218..432990, complement)

Chromosome 5 - NC_029260.1 Genomic Context describing neighboring genes

Genomic Sequence:: NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Submit: New GeneRIF Correction

Function	Evidence Code	Pubs
enables ABC-type transporter activity	IEA Inferred from Electronic Annotation more info	PubMed
enables ATP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables ATP hydrolysis activity	IEA Inferred from Electronic Annotation more info	PubMed
enables long-chain fatty acid transmembrane transporter activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in fatty acid beta-oxidation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in long-chain fatty acid import into peroxisome	IEA Inferred from Electronic Annotation more info	PubMed
involved_in peroxisome organization	IEA Inferred from Electronic Annotation more info	PubMed
involved_in very long-chain fatty acid catabolic process	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in peroxisomal membrane	IEA Inferred from Electronic Annotation more info	PubMed

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The following sections contain reference sequences that belong to a specific genome build. Explain