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    LOC4336823 E3 ubiquitin-protein ligase Os04g0590900-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336823, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4336823
    Gene description
    E3 ubiquitin-protein ligase Os04g0590900-like
    Locus tag
    OSNPB_040590900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_15972
    Expression
    Broad expression in leaves before flowering (RPKM 8.9), flowers (RPKM 6.4) and 5 other tissues See more
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    Genomic context

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    See LOC4336823 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (30389550..30391333, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (29883373..29888455, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112938737 Neighboring gene transcription factor bHLH94 Neighboring gene 28 kDa ribonucleoprotein, chloroplastic Neighboring gene protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1 Neighboring gene uncharacterized LOC4336826

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase Os04g0590900
    Names
    LOC_Os04g50100
    OSJNBa0086O06.21
    RING-H2 finger protein Os04g0590900
    RING-type E3 ubiquitin transferase Os04g0590900
    putative RING-H2 finger protein ATL5G
    NP_001406762.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419833.1 → NP_001406762.1  E3 ubiquitin-protein ligase Os04g0590900

      Status: VALIDATED

      Source sequence(s)
      AK066752, CB677899, CI571749
      UniProtKB/Swiss-Prot
      A0A0P0WE68, Q7XLY8
      UniProtKB/TrEMBL
      A2XWZ9, Q01HI7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      30389550..30391333 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XLY8.2 GenPept UniProtKB/Swiss-Prot:Q7XLY8

    Gene LinkOut

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