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    LOC4328107 choline/ethanolaminephosphotransferase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328107, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328107
    Gene description
    choline/ethanolaminephosphotransferase 1
    Locus tag
    OSNPB_020119800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1217_F02.24
    Expression
    Ubiquitous expression in roots before flowering (RPKM 39.2), roots after flowering (RPKM 37.7) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (1047416..1052579)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (1040497..1045766)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4328105 Neighboring gene uncharacterized LOC136355182 Neighboring gene pentatricopeptide repeat-containing protein At2g17670 Neighboring gene pentatricopeptide repeat-containing protein At2g17033 Neighboring gene GDSL esterase/lipase At5g55050 Neighboring gene serine/threonine-protein kinase STY46

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphotransferase activity, for other substituted phosphate groups IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phospholipid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    choline/ethanolaminephosphotransferase 1
    Names
    OSJNBb0088N06.8
    Os02g0119800
    putative aminoalcoholphosphotransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      1047416..1052579
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769734.3 → XP_015625220.1  choline/ethanolaminephosphotransferase 1

      UniProtKB/TrEMBL
      A0A0P0VE21, A0A0P0VE27, A0A8J8Y9N5, B9F252, Q0E4H0
      Conserved Domains (1) summary
      PLN02359
      Location:1 → 389
      PLN02359; ethanolaminephosphotransferase
    Nucleotide Protein
    Heading Accession and Version

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