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    LOC4341765 uncharacterized LOC4341765 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341765, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4341765
    Gene description
    uncharacterized LOC4341765
    Locus tag
    OSNPB_060663600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 4.6), roots after flowering (RPKM 4.3) and 6 other tissues See more
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    Genomic context

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    See LOC4341765 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (28262829..28265770, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (27396040..27400433, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase STY13 Neighboring gene squamosa promoter-binding-like protein 11 Neighboring gene uncharacterized LOC112939244 Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic Neighboring gene receptor-like cytosolic serine/threonine-protein kinase RBK1 Neighboring gene uncharacterized LOC112939332

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA endonuclease activity, producing 5'-phosphomonoesters IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4341765
    Names
    OSJNBb0065C04.45
    Os06g0663600
    endonuclease V protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      28262829..28265770 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785752.3 → XP_015641238.1  uncharacterized protein LOC4341765 isoform X2

      UniProtKB/TrEMBL
      B8B114
      Conserved Domains (1) summary
      cd06559
      Location:4 → 245
      Endonuclease_V; Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases

    2. XM_066311367.1 → XP_066167464.1  uncharacterized protein LOC4341765 isoform X1

      UniProtKB/TrEMBL
      B8B114, B9FQD2

    3. XM_066311369.1 → XP_066167466.1  uncharacterized protein LOC4341765 isoform X3

      UniProtKB/TrEMBL
      B8B114

    4. XM_015785749.3 → XP_015641235.1  uncharacterized protein LOC4341765 isoform X1

      UniProtKB/TrEMBL
      B8B114, B9FQD2
      Conserved Domains (1) summary
      cd06559
      Location:20 → 261
      Endonuclease_V; a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases

    5. XM_015785750.3 → XP_015641236.1  uncharacterized protein LOC4341765 isoform X1

      UniProtKB/TrEMBL
      B8B114, B9FQD2
      Conserved Domains (1) summary
      cd06559
      Location:20 → 261
      Endonuclease_V; a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases

    6. XM_066311368.1 → XP_066167465.1  uncharacterized protein LOC4341765 isoform X2

      UniProtKB/TrEMBL
      B8B114
    Nucleotide Protein
    Heading Accession and Version

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