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    LOC4340405 polyadenylate-binding protein-interacting protein 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340405, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4340405
    Gene description
    polyadenylate-binding protein-interacting protein 7
    Locus tag
    OSNPB_060199200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1147_D11.1-1
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    Genomic context

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    See LOC4340405 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (5202736..5207544, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (5036128..5041234, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene putative glycine-rich cell wall structural protein 1 Neighboring gene pentatricopeptide repeat-containing protein At3g18110, chloroplastic Neighboring gene U4 spliceosomal RNA Neighboring gene uncharacterized LOC107278582 Neighboring gene phosphopantothenoylcysteine decarboxylase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    polyadenylate-binding protein-interacting protein 7
    Names
    B1172G12.23-1
    Os06g0199200
    smr domain-containing protein -like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      5202736..5207544 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787622.2 → XP_015643108.1  polyadenylate-binding protein-interacting protein 7

      UniProtKB/TrEMBL
      A0A0N7KLQ1, A2YAD3, Q0DDU3, Q69K57
      Conserved Domains (3) summary
      cd14371
      Location:206 → 248
      CUE_CID7_like; CUE domain found in CTC-interacting domain proteins CID5, CID6, CID7 and similar proteins
      pfam08590
      Location:381 → 440
      DUF1771; Domain of unknown function (DUF1771)
      cl02619
      Location:448 → 531
      Smr; Smr domain
    Nucleotide Protein
    Heading Accession and Version

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