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    LOC4347586 disease resistance protein Pik-2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347586, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347586
    Gene description
    disease resistance protein Pik-2-like
    Locus tag
    OSNPB_090517100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 48.7), roots after flowering (RPKM 20.7) and 4 other tissues See more
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    Genomic context

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    See LOC4347586 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (24569098..24573572, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (20157706..20162098, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene BAG-associated GRAM protein 1 Neighboring gene uncharacterized LOC4347585 Neighboring gene disease resistance protein RPM1 Neighboring gene formin-like protein 15

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein Pik-2-like
    Names
    Os09g0517100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      24569098..24573572 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756750.3 → XP_015612236.2  disease resistance protein Pik-2-like

      UniProtKB/TrEMBL
      A3C0N6
      Conserved Domains (4) summary
      COG4886
      Location:582 → 888
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd14798
      Location:63 → 166
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      sd00031
      Location:619 → 643
      LRR_1; leucine-rich repeat [structural motif]
      pfam00931
      Location:238 → 498
      NB-ARC; NB-ARC domain
    Nucleotide Protein
    Heading Accession and Version

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