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    LOC4352518 serine/arginine repetitive matrix protein 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352518, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4352518
    Gene description
    serine/arginine repetitive matrix protein 2
    Locus tag
    OSNPB_120561200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 24.3), flowers (RPKM 20.8) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (23661848..23665266, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (22972922..22976338, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit 5C-like Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene pectinesterase inhibitor 10 Neighboring gene probable N-acetyltransferase HLS1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Ino80 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/arginine repetitive matrix protein 2
    Names
    Os12g0561200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423572.1 → NP_001410501.1  serine/arginine repetitive matrix protein 2

      Status: VALIDATED

      Source sequence(s)
      AK063760, AK110847, CB650606, CB666535
      UniProtKB/TrEMBL
      B9GDS3, Q2QNL8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      23661848..23665266 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765122.3 → XP_015620608.1  serine/arginine repetitive matrix protein 2 isoform X1

      UniProtKB/TrEMBL
      B9GDS3
      Conserved Domains (2) summary
      pfam04438
      Location:520 → 551
      zf-HIT; HIT zinc finger
      pfam04795
      Location:422 → 503
      PAPA-1; PAPA-1-like conserved region

    2. XM_066305993.1 → XP_066162090.1  serine/arginine repetitive matrix protein 2 isoform X2

      UniProtKB/TrEMBL
      B9GDS3, Q2QNL8

    3. XM_015765123.3 → XP_015620609.1  serine/arginine repetitive matrix protein 2 isoform X1

      UniProtKB/TrEMBL
      B9GDS3
      Conserved Domains (2) summary
      pfam04438
      Location:520 → 551
      zf-HIT; HIT zinc finger
      pfam04795
      Location:422 → 503
      PAPA-1; PAPA-1-like conserved region
    Nucleotide Protein
    Heading Accession and Version

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