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    LOC9268318 sister chromatid cohesion protein PDS5 homolog A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9268318, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC9268318
    Gene description
    sister chromatid cohesion protein PDS5 homolog A
    Locus tag
    OSNPB_060286351
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Pizh_6
    Expression
    Ubiquitous expression in roots after flowering (RPKM 34.3), leaves before flowering (RPKM 33.4) and 6 other tissues See more
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    Genomic context

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    See LOC9268318 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    33
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (10521231..10535389, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (10344226..10358406, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356827 Neighboring gene DNA oxidative demethylase ALKBH2 Neighboring gene protein NOI4 Neighboring gene putative disease resistance RPP13-like protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic sister chromatid cohesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sister chromatid cohesion protein PDS5 homolog A
    Names
    AF-4 domain containing protein-like protein
    Os06g0286351
    P0502B12.54
    putative Spo76 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      10521231..10535389 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788163.3 → XP_015643649.1  sister chromatid cohesion protein PDS5 homolog A isoform X2

      UniProtKB/TrEMBL
      A0A411DB77, C7J3W0, Q5VMT5
      Conserved Domains (2) summary
      sd00044
      Location:266 → 296
      HEAT; HEAT repeat [structural motif]
      pfam09507
      Location:1410 → 1559
      CDC27; DNA polymerase subunit Cdc27

    2. XM_026026055.2 → XP_025881840.1  sister chromatid cohesion protein PDS5 homolog A isoform X1

      UniProtKB/TrEMBL
      A0A411DB77
      Conserved Domains (2) summary
      sd00044
      Location:266 → 296
      HEAT; HEAT repeat [structural motif]
      pfam10243
      Location:1424 → 1577
      MIP-T3; Microtubule-binding protein MIP-T3
    Nucleotide Protein
    Heading Accession and Version

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