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    LOC4345847 uncharacterized LOC4345847 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345847, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4345847
    Gene description
    uncharacterized LOC4345847
    Locus tag
    OSNPB_080480100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1113_A10.31-1; OJ1113_A10.31-2
    Expression
    Ubiquitous expression in roots before flowering (RPKM 314.2), roots after flowering (RPKM 222.5) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (23857671..23862020, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (23717832..23722267, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281868 Neighboring gene protein DETOXIFICATION 27 Neighboring gene 2-oxoglutarate-dependent dioxygenase 19-like Neighboring gene UDP-glucosyltransferase UGT13248-like Neighboring gene plant cysteine oxidase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables signal recognition particle binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in SRP-dependent cotranslational protein targeting to membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of signal recognition particle receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4345847
    Names
    OSJNBb0092C08.1-1
    OSJNBb0092C08.1-2
    Os08g0480100
    putative signal recognition particle receptor
    signal recognition particle receptor subunit alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      23857671..23862020 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794367.3 → XP_015649853.1  uncharacterized protein LOC4345847

      UniProtKB/TrEMBL
      A0A0N7KQ10, A2YWB0, Q0J4Z4, Q6Z245, Q6Z246
      Conserved Domains (3) summary
      cd17876
      Location:419 → 622
      SRalpha_C; C-terminal domain of signal recognition particle receptor alpha subunit
      pfam02881
      Location:320 → 389
      SRP54_N; SRP54-type protein, helical bundle domain
      pfam04086
      Location:30 → 289
      SRP-alpha_N; Signal recognition particle, alpha subunit, N-terminal

    2. XM_066303685.1 → XP_066159782.1  uncharacterized protein LOC4345847

      UniProtKB/TrEMBL
      A0A0N7KQ10, A2YWB0, Q0J4Z4, Q6Z245, Q6Z246
    Nucleotide Protein
    Heading Accession and Version

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