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    LOC4329486 potassium transporter 19-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329486, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4329486
    Gene description
    potassium transporter 19-like
    Locus tag
    OSNPB_020518600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    HAK19; OsHAK19
    Expression
    Broad expression in flowers (RPKM 4.3), flower buds (RPKM 1.1) and 5 other tissues See more
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    Genomic context

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    See LOC4329486 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (18845551..18851880, complement)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene probable magnesium transporter NIPA8 Neighboring gene protein indeterminate-domain 2-like Neighboring gene uncharacterized LOC4329485 Neighboring gene uncharacterized LOC4329487 Neighboring gene potassium transporter 20-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables potassium ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in potassium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    potassium transporter 19
    Names
    LOC_Os02g31910
    P0461D06.12
    putative high-affinity potassium transporter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416628.1 → NP_001403557.1  potassium transporter 19

      Status: VALIDATED

      Source sequence(s)
      AK106353, CB674267, CI091137, CI309280
      UniProtKB/Swiss-Prot
      A0A0P0VJR7, Q6H4M2
      UniProtKB/TrEMBL
      A3A7E4

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      18845551..18851880 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767954.2 → XP_015623440.1  potassium transporter 19

      UniProtKB/Swiss-Prot
      Q6H4M2
      Conserved Domains (1) summary
      cl15781
      Location:17 → 740
      K_trans; K+ potassium transporter

    2. XM_015767955.2 → XP_015623441.1  potassium transporter 19

      UniProtKB/Swiss-Prot
      A0A0P0VJR7, Q6H4M2
      UniProtKB/TrEMBL
      A3A7E4
      Conserved Domains (1) summary
      cl15781
      Location:17 → 740
      K_trans; K+ potassium transporter

    3. XM_015767953.2 → XP_015623439.1  potassium transporter 19

      UniProtKB/Swiss-Prot
      A0A0P0VJR7, Q6H4M2
      UniProtKB/TrEMBL
      A3A7E4
      Conserved Domains (1) summary
      cl15781
      Location:17 → 740
      K_trans; K+ potassium transporter
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6H4M2.1 GenPept UniProtKB/Swiss-Prot:Q6H4M2

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