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    LOC4349420 E3 ubiquitin-protein ligase BRE1-like 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349420, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4349420
    Gene description
    E3 ubiquitin-protein ligase BRE1-like 2
    Locus tag
    OSNPB_100565600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    HUB2; BRE1B; FRRP1; OsHUB2; OsJ_32496; OsJ_031219
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    Genomic context

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    See LOC4349420 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (23080826..23088002)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (22388699..22395870)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4349418 Neighboring gene BOI-related E3 ubiquitin-protein ligase 1 Neighboring gene protein CHROMATIN REMODELING 24-like Neighboring gene uncharacterized LOC9266361

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Histone H2B Monoubiquitination Mediated by HISTONE MONOUBIQUITINATION1 and HISTONE MONOUBIQUITINATION2 Is Involved in Anther Development by Regulating Tapetum Degradation-Related Genes in Rice. Cao H, et al. Plant Physiol, 2015 Aug. PMID 26143250, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of HULC complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase BRE1-like 2
    Names
    LOC_Os10g41590
    OSJNBa0057L21
    Protein HISTONE MONOUBIQUITINATION 2
    RING-type E3 ubiquitin transferase BRE1-like 2
    flowering-related RING protein 1
    NP_001410032.1
    NP_001410033.1
    XP_025876595.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423103.1 → NP_001410032.1  E3 ubiquitin-protein ligase BRE1-like 2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK103864, AU222554
      UniProtKB/Swiss-Prot
      A2ZAC2, A3C7E7, B7EV99, B8BIA7, Q336R2, Q336R3, Q8S7C5

    2. NM_001423104.1 → NP_001410033.1  E3 ubiquitin-protein ligase BRE1-like 2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK103864, AU222554, C28441

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      23080826..23088002
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026020810.2 → XP_025876595.1  E3 ubiquitin-protein ligase BRE1-like 2 isoform X1

      UniProtKB/Swiss-Prot
      A2ZAC2, A3C7E7, B7EV99, B8BIA7, Q336R2, Q336R3, Q8S7C5
      Conserved Domains (3) summary
      COG1196
      Location:113 → 787
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:303 → 580
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      cd16499
      Location:790 → 831
      RING-HC_BRE1_like; RING finger, HC subclass, found in yeast Bre1 and its homologs from eukaryotes
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q336R3.1 GenPept UniProtKB/Swiss-Prot:Q336R3

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