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    LOC4342981 DEAD-box ATP-dependent RNA helicase 5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342981, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4342981
    Gene description
    DEAD-box ATP-dependent RNA helicase 5-like
    Locus tag
    OSNPB_070301200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4342981 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (12001027..12008324, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (11887217..11894417, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357365 Neighboring gene aspartokinase 2, chloroplastic Neighboring gene small nucleolar RNA R71 Neighboring gene receptor-like serine/threonine-protein kinase SD1-8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dEAD-box ATP-dependent RNA helicase 5
    Names
    B1114D08.16-1
    DEAD-box ATP-dependent RNA helicase 5
    LOC_Os07g20580
    RNA helicase
    putative RNA helicase
    NP_001389977.1
    NP_001389978.1
    XP_066168067.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403048.1 → NP_001389977.1  dEAD-box ATP-dependent RNA helicase 5 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AB110202, CB669398, CF324318, CI450021, CI682357
      UniProtKB/Swiss-Prot
      A0A0P0X5C0, Q6YS30, Q7XXP9
      UniProtKB/TrEMBL
      B8A6R8

    2. NM_001403049.1 → NP_001389978.1  dEAD-box ATP-dependent RNA helicase 5 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK102570, CB669397, CB669398, CI450021
      UniProtKB/TrEMBL
      A0A0N7KNA6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      12001027..12008324 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311970.1 → XP_066168067.1  dEAD-box ATP-dependent RNA helicase 5 isoform X1

      UniProtKB/TrEMBL
      A0A0N7KNA6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6YS30.1 GenPept UniProtKB/Swiss-Prot:Q6YS30

    Gene LinkOut

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