LOC4345638 uncharacterized LOC4345638 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4345638
Gene description: uncharacterized LOC4345638
Locus tag: OSNPB_080431100
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: OJ1111_B08.7; OJ1124_B05.16
Expression: Broad expression in roots after flowering (RPKM 93.3), leaves after flowering (RPKM 84.8) and 6 other tissues See more
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Genomic context

Location:: chromosome: 8

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	8	NC_029263.1 (20848010..20852947)

Chromosome 8 - NC_029263.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables chromatin binding	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: uncharacterized LOC4345638; uncharacterized protein LOC4345638

Names: Os08g0431100

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001422572.1 → NP_001409501.1 uncharacterized LOC4345638

Status: VALIDATED

Source sequence(s)

AK069476, AK072110, CB680773, CI345764

UniProtKB/TrEMBL

A0A0P0XG18, Q0J5J1, Q6ZKB4, Q6ZKT6

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029263.1 Reference IRGSP-1.0 Primary Assembly

Range

20848010..20852947

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015794528.2 → XP_015650014.1 uncharacterized protein LOC4345638

UniProtKB/TrEMBL

Q6ZKB4

Conserved Domains (3) summary

smart00743
Location:479 → 532

Agenet; Tudor-like domain present in plant sequences

cd04721
Location:196 → 323

BAH_plant_1; BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these ...

pfam05641
Location:397 → 451

Agenet; Agenet domain