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    LOC4326881 pentatricopeptide repeat-containing protein At4g38150 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326881, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326881
    Gene description
    pentatricopeptide repeat-containing protein At4g38150
    Locus tag
    OSNPB_010546500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (20882771..20884051, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (20312949..20314205, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene WAT1-related protein At5g64700 Neighboring gene WAT1-related protein At5g64700 Neighboring gene pentatricopeptide repeat-containing protein At5g40400 Neighboring gene putative pectate lyase 21

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At4g38150
    Names
    OSJNBa0026J14.19
    Os01g0546500
    fertility restorer -like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      20882771..20884051 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015763412.3 → XP_015618898.1  pentatricopeptide repeat-containing protein At4g38150

      UniProtKB/TrEMBL
      A0A8J8YFG4, B9EXF7, Q0JM32, Q8RYR6
      Conserved Domains (3) summary
      PLN03218
      Location:150 → 279
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:176 → 200
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:204 → 253
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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