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    LOC4328769 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328769, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4328769
    Gene description
    serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B
    Locus tag
    OSNPB_020224200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_005772
    Expression
    Ubiquitous expression in flowers (RPKM 17.4), leaves before flowering (RPKM 15.1) and 6 other tissues See more
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    Genomic context

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    See LOC4328769 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (6988583..6996455, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (6964039..6971930, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4328767 Neighboring gene probable protein phosphatase 2C 12 Neighboring gene uncharacterized LOC4328770 Neighboring gene uncharacterized LOC4328771

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein phosphatase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of protein phosphatase type 2A complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform
    Names
    LOC_Os02g13110
    P0470A03.14
    putative Ser/Thr specific protein phosphatase 2A B regulatory subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409870.1 → NP_001396799.1  serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform

      Status: VALIDATED

      Source sequence(s)
      AK101100
      UniProtKB/Swiss-Prot
      A3A4Q0, B7ERB7, Q0E2P1
      UniProtKB/TrEMBL
      B9F4C8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      6988583..6996455 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771881.3 → XP_015627367.1  serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1

      UniProtKB/TrEMBL
      B9F4C8
      Conserved Domains (3) summary
      COG5170
      Location:31 → 524
      CDC55; Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
      sd00039
      Location:248 → 287
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:234 → 437
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0E2P1.1 GenPept UniProtKB/Swiss-Prot:Q0E2P1

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