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    LOC4329902 uncharacterized LOC4329902 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329902, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329902
    Gene description
    uncharacterized LOC4329902
    Locus tag
    OSNPB_020602500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1669_F01.12-1; OJ1669_F01.12-2; OJ1791_B03.50-1; OJ1791_B03.50-2
    Expression
    Ubiquitous expression in flower buds (RPKM 8.3), mature seeds (RPKM 8.2) and 6 other tissues See more
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    Genomic context

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    See LOC4329902 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (24060914..24063339, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23578398..23580845, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase inhibitor 2 Neighboring gene transcription termination factor MTERF5, chloroplastic-like Neighboring gene UBP1-associated protein 2B Neighboring gene protein VERNALIZATION 3-like Neighboring gene vesicle transport protein GOT1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in generation of catalytic spliceosome for second transesterification step IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA 3'-splice site recognition IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Prp19 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of post-mRNA release spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of post-spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4329902
    Names
    2 coiled coil domains of eukaryotic origin (31.3 kD)-like protein
    Os02g0602500
    pre-mRNA-splicing factor ISY1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      24060914..24063339 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770451.3 → XP_015625937.1  uncharacterized protein LOC4329902

      UniProtKB/TrEMBL
      A2X6X4, A3A8S8, Q6K5F4
      Conserved Domains (1) summary
      pfam06246
      Location:1 → 290
      Isy1; Isy1-like splicing family
    Nucleotide Protein
    Heading Accession and Version

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