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    LOC4352003 coilin [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352003, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4352003
    Gene description
    coilin
    Locus tag
    OSNPB_120288600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 13.7), flowers (RPKM 12.5) and 6 other tissues See more
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    Genomic context

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    See LOC4352003 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (11060760..11076616, complement)

    Chromosome 12 - NC_029267.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene E3 ubiquitin-protein ligase RGLG2 Neighboring gene uncharacterized LOC112937315 Neighboring gene mitochondrial inner membrane protease ATP23 Neighboring gene protein STICHEL-like 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029267.1 Chromosome 12 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables U1 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables U2 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in spliceosomal snRNP assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Cajal body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    coilin
    Names
    Os12g0288600
    Os12g0288801

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029267.1 Reference IRGSP-1.0 Primary Assembly

      Range
      11060760..11076616 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765237.2 → XP_015620723.1  coilin

      UniProtKB/TrEMBL
      Q0INV2, Q2QTN6
      Conserved Domains (1) summary
      pfam15862
      Location:9 → 91
      Coilin_N; Coilin N-terminus
    Nucleotide Protein
    Heading Accession and Version

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