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    LOC4347671 polygalacturonate 4-alpha-galacturonosyltransferase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347671, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4347671
    Gene description
    polygalacturonate 4-alpha-galacturonosyltransferase
    Locus tag
    OSNPB_090531900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0515E01.7; OJ1254_E07.22
    Expression
    Broad expression in flowers (RPKM 72.6), flower buds (RPKM 50.7) and 6 other tissues See more
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    Genomic context

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    See LOC4347671 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (25304735..25308769, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (20862638..20866756, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene PTI1-like tyrosine-protein kinase At3g15890 Neighboring gene polygalacturonate 4-alpha-galacturonosyltransferase-like Neighboring gene protein STAY-GREEN, chloroplastic-like Neighboring gene NDR1/HIN1-like protein 26

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polygalacturonate 4-alpha-galacturonosyltransferase
    Names
    Os09g0531900
    glycosyl transferase family 8 protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422919.1 → NP_001409848.1  polygalacturonate 4-alpha-galacturonosyltransferase

      Status: VALIDATED

      Source sequence(s)
      AK073015, AP014965, CI749249, CI758861
      UniProtKB/TrEMBL
      B8BDU2, B9G4Q4, Q652K2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      25304735..25308769 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756194.3 → XP_015611680.1  polygalacturonate 4-alpha-galacturonosyltransferase isoform X1

      UniProtKB/TrEMBL
      B8BDU2
      Conserved Domains (1) summary
      PLN02910
      Location:97 → 697
      PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase
    Nucleotide Protein
    Heading Accession and Version

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