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    LOC4325242 uncharacterized LOC4325242 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325242, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325242
    Gene description
    uncharacterized LOC4325242
    Locus tag
    OSNPB_010960300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4325242 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (42981480..42987958, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (42329285..42335796, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene nitrate regulatory gene2 protein Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g06840 Neighboring gene E3 ubiquitin-protein ligase RGLG3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables flavin adenine dinucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tRNA wobble uridine modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4325242
    Names
    Os01g0960300
    P0401G10.24
    putative glucose inhibited division protein A
    tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      42981480..42987958 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793659.3 → XP_015649145.1  uncharacterized protein LOC4325242 isoform X2

      UniProtKB/TrEMBL
      B8A9J8
      Conserved Domains (1) summary
      PRK05192
      Location:13 → 591
      PRK05192; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG

    2. XM_015793651.3 → XP_015649137.1  uncharacterized protein LOC4325242 isoform X1

      UniProtKB/TrEMBL
      B8A9J8, B9EWK3, Q0JFU9, Q5JN40
      Conserved Domains (3) summary
      PRK05192
      Location:66 → 684
      PRK05192; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
      pfam13932
      Location:463 → 673
      GIDA_assoc; GidA associated domain
      cl21454
      Location:70 → 486
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    Nucleotide Protein
    Heading Accession and Version

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