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    LOC4351380 probable inactive serine/threonine-protein kinase bub1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351380, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4351380
    Gene description
    probable inactive serine/threonine-protein kinase bub1
    Locus tag
    OSNPB_120125300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 3.4), flowers (RPKM 1.1) and 6 other tissues See more
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    Genomic context

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    See LOC4351380 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (1212868..1216578, complement)

    Chromosome 12 - NC_029267.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107279732 Neighboring gene uncharacterized LOC9267002 Neighboring gene bifunctional aspartokinase/homoserine dehydrogenase 1 Neighboring gene protein DETOXIFICATION 21

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029267.1 Chromosome 12 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in meiotic sister chromatid cohesion, centromeric IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic spindle assembly checkpoint signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable inactive serine/threonine-protein kinase bub1
    Names
    Os12g0125300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029267.1 Reference IRGSP-1.0 Primary Assembly

      Range
      1212868..1216578 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015763354.2 → XP_015618840.1  probable inactive serine/threonine-protein kinase bub1

      UniProtKB/TrEMBL
      A0A8J8YAZ9, A2ZHN6, A3CEJ1, Q0IQF3, Q2QYB8
      Conserved Domains (1) summary
      pfam08311
      Location:27 → 140
      Mad3_BUB1_I; Mad3/BUB1 homology region 1
    Nucleotide Protein
    Heading Accession and Version

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