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    LOC4338566 thiamine pyrophosphokinase 3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338566, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4338566
    Gene description
    thiamine pyrophosphokinase 3-like
    Locus tag
    OSNPB_050367400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    TPK3; OsTPK3; OsJ_18271
    Expression
    Broad expression in leaves after flowering (RPKM 26.7), roots before flowering (RPKM 23.6) and 4 other tissues See more
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    Genomic context

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    See LOC4338566 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (17644846..17649678, complement)

    Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4338564 Neighboring gene uncharacterized LOC4338565 Neighboring gene heat shock 70 kDa protein BIP3 Neighboring gene NDR1/HIN1-like protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables thiamine binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables thiamine diphosphokinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in thiamine diphosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in thiamine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thiamine pyrophosphokinase 3
    Names
    LOC_Os05g30454
    OSJNBa0090H02.18
    Thiamine kinase 3
    XP_015637762.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420398.1 → NP_001407327.1  thiamine pyrophosphokinase 3

      Status: VALIDATED

      Source sequence(s)
      AK108439
      UniProtKB/Swiss-Prot
      A0A0P0WLG7, B9FP75, Q60DX1

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

      Range
      17644846..17649678 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782276.2 → XP_015637762.1  thiamine pyrophosphokinase 3

      UniProtKB/Swiss-Prot
      Q60DX1
      Conserved Domains (2) summary
      cd07995
      Location:34 → 262
      TPK; Thiamine pyrophosphokinase
      PLN02714
      Location:34 → 263
      PLN02714; thiamin pyrophosphokinase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q60DX1.1 GenPept UniProtKB/Swiss-Prot:Q60DX1

    Gene LinkOut

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    Research Materials