LOC4329629 protein FAR1-RELATED SEQUENCE 5 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4329629
Gene description: protein FAR1-RELATED SEQUENCE 5
Locus tag: OSNPB_020550900
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: OJ1004_H01.1-1
Expression: Ubiquitous expression in roots after flowering (RPKM 9.6), leaves after flowering (RPKM 9.6) and 6 other tissues See more
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Genomic context

Location:: chromosome: 2

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	2	NC_029257.1 (20737910..20741036, complement)

Chromosome 2 - NC_029257.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables zinc ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: protein FAR1-RELATED SEQUENCE 5

Names: Os02g0550900; P0451A10.34-1; putative far-red impaired response protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001417110.1 → NP_001404039.1 protein FAR1-RELATED SEQUENCE 5

Status: VALIDATED

Source sequence(s)

AK068291, AK102807

UniProtKB/TrEMBL

B7ETM8, Q0E0H6, Q6ZI45

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029257.1 Reference IRGSP-1.0 Primary Assembly

Range

20737910..20741036 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015770947.2 → XP_015626433.1 protein FAR1-RELATED SEQUENCE 5

UniProtKB/TrEMBL

Q6ZI45

Conserved Domains (1) summary

PLN03097
Location:59 → 642

FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional