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    LOC4325465 thylakoid lumenal 15 kDa protein 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325465, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325465
    Gene description
    thylakoid lumenal 15 kDa protein 1, chloroplastic
    Locus tag
    OSNPB_010144100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 28.6), flowers (RPKM 16.4) and 5 other tissues See more
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    Genomic context

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    See LOC4325465 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (2391416..2393406, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (2383601..2385648, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At2g39795, mitochondrial Neighboring gene probable pectin methylesterase CGR2 Neighboring gene uncharacterized LOC4325466 Neighboring gene uncharacterized LOC4325467 Neighboring gene uncharacterized LOC136353623

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in chloroplast thylakoid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thylakoid lumenal 15 kDa protein 1, chloroplastic
    Names
    Os01g0144100
    P0024G09.30

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      2391416..2393406 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756772.3 → XP_015612258.1  thylakoid lumenal 15 kDa protein 1, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0UY61, A0A979HIW5, B8AD81, Q0JQR2, Q9ARP1
      Conserved Domains (1) summary
      COG1357
      Location:68 → 195
      YjbI; Uncharacterized protein YjbI, contains pentapeptide repeats [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

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