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    LOC4338873 multiple C2 domain and transmembrane region protein 6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338873, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338873
    Gene description
    multiple C2 domain and transmembrane region protein 6
    Locus tag
    OSNPB_050429700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4338873 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (21187366..21190313, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (21081096..21084166, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene patellin-3 Neighboring gene uncharacterized LOC9268627 Neighboring gene transcription factor MYB8 Neighboring gene white stripe leaf8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    multiple C2 domain and transmembrane region protein 6
    Names
    Os05g0429700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      21187366..21190313 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782218.3 → XP_015637704.1  multiple C2 domain and transmembrane region protein 6

      UniProtKB/TrEMBL
      B8AYI7, B9FPR0, Q0DHY9, Q5TKJ0
      Conserved Domains (4) summary
      cd04019
      Location:235 → 386
      C2C_MCTP_PRT_plant; C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
      cd08378
      Location:72 → 197
      C2B_MCTP_PRT_plant; C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
      cd08379
      Location:398 → 521
      C2D_MCTP_PRT_plant; C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
      pfam08372
      Location:649 → 804
      PRT_C; Plant phosphoribosyltransferase C-terminal
    Nucleotide Protein
    Heading Accession and Version

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