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    LOC4336046 NAP1-related protein 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336046, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4336046
    Gene description
    NAP1-related protein 1-like
    Locus tag
    OSNPB_040459700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 38.7), mature seeds (RPKM 31.1) and 6 other tissues See more
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    Genomic context

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    See LOC4336046 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (23437405..23441113, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22943173..22946886, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic Neighboring gene ran guanine nucleotide release factor Neighboring gene ATP-dependent RNA helicase SUV3L, mitochondrial-like Neighboring gene protease Do-like 8, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nAP1-related protein 1
    Names
    LOC_Os04g38620
    NAP1-related protein 1
    OSJNBa0036B21.26
    OSJNBa0072F16.3
    Protein SET homolog 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419394.1 → NP_001406323.1  nAP1-related protein 1

      Status: VALIDATED

      Source sequence(s)
      AK102874, AK109192, CI280485
      UniProtKB/Swiss-Prot
      A0A0P0WB53, A2XU85, Q01IJ4, Q7X7C9
      UniProtKB/TrEMBL
      A0A0P0WB77

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      23437405..23441113 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026025151.2 → XP_025880936.1  nAP1-related protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A0P0WB77
      Conserved Domains (1) summary
      cl08298
      Location:42 → 178
      NAP; Nucleosome assembly protein (NAP)

    2. XM_015778343.3 → XP_015633829.1  nAP1-related protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WB77
      Conserved Domains (1) summary
      pfam00956
      Location:27 → 208
      NAP; Nucleosome assembly protein (NAP)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7X7C9.1 GenPept UniProtKB/Swiss-Prot:Q7X7C9

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