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    LOC4333323 GDSL esterase/lipase At5g37690 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333323, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4333323
    Gene description
    GDSL esterase/lipase At5g37690
    Locus tag
    OSNPB_030580800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 11.1) and flowers (RPKM 8.9) See more
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    Genomic context

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    See LOC4333323 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (22155290..22171790, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (21306666..21313548, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355521 Neighboring gene putative disease resistance RPP13-like protein 1 Neighboring gene GDSL esterase/lipase At5g55050 Neighboring gene uncharacterized LOC107278072 Neighboring gene uncharacterized LOC4333324 Neighboring gene uncharacterized LOC136355790 Neighboring gene uncharacterized LOC107280485

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, acting on ester bonds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GDSL esterase/lipase At5g37690
    Names
    Os03g0580800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      22155290..22171790 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309104.1 → XP_066165201.1  GDSL esterase/lipase At5g37690

      UniProtKB/TrEMBL
      Q0DQM2, Q10HP9

    2. XM_066309103.1 → XP_066165200.1  GDSL esterase/lipase At5g37690

      UniProtKB/TrEMBL
      Q0DQM2, Q10HP9

    3. XM_015774581.3 → XP_015630067.1  GDSL esterase/lipase At5g37690

      UniProtKB/TrEMBL
      A3AJV3, Q0DQM2, Q10HP9
      Conserved Domains (1) summary
      cd01837
      Location:46 → 352
      SGNH_plant_lipase_like; a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its ...
    Nucleotide Protein
    Heading Accession and Version

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