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    LOC4349813 protein S40-7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349813, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4349813
    Gene description
    protein S40-7
    Locus tag
    OSNPB_110154300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 1.6), roots before flowering (RPKM 0.9) and 6 other tissues See more
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    Genomic context

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    See LOC4349813 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (2585492..2586368)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (2539712..2542918)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112936903 Neighboring gene uncharacterized LOC112936904 Neighboring gene NAC domain-containing protein 90 Neighboring gene uncharacterized LOC107279287 Neighboring gene putative CBL-interacting protein kinase 27

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein S40-7
    Names
    Os11g0154300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      2585492..2586368
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015760538.3 → XP_015616024.1  protein S40-7

      UniProtKB/TrEMBL
      A2ZBK5, A3C8R3, Q53QG6
      Conserved Domains (1) summary
      pfam04520
      Location:26 → 171
      Senescence_reg; Senescence regulator
    Nucleotide Protein
    Heading Accession and Version

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