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    LOC4324841 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324841, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4324841
    Gene description
    UDP-glucuronate:xylan alpha-glucuronosyltransferase 1
    Locus tag
    OSNPB_010880200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GUX1
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    Genomic context

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    See LOC4324841 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38827115..38832635)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (38197001..38202539)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 4-kinase gamma 4 Neighboring gene uncharacterized LOC9267054 Neighboring gene probable pectinesterase/pectinesterase inhibitor 51 Neighboring gene protein trichome berefringence-like 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Biochemical Characterization of Rice Xylan Biosynthetic Enzymes in Determining Xylan Chain Elongation and Substitutions. Zhong R, et al. Plant Cell Physiol, 2024 Jun 27. PMID 38501734
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in xylan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UDP-glucuronate:xylan alpha-glucuronosyltransferase 1
    Names
    Os01g0880200
    P0018C10.44-1
    glycogenin-like protein
    xylan glucuronyltransferase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      38827115..38832635
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765446.3 → XP_015620932.1  UDP-glucuronate:xylan alpha-glucuronosyltransferase 1

      UniProtKB/TrEMBL
      A0A0N7KE64, B8A7E1, Q5NA53
      Conserved Domains (1) summary
      cd02537
      Location:306 → 551
      GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
    Nucleotide Protein
    Heading Accession and Version

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