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    LOC4328675 uncharacterized LOC4328675 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328675, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328675
    Gene description
    uncharacterized LOC4328675
    Locus tag
    OSNPB_020205400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4328675 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (5935389..5940792)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (5924724..5930097)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene BIIDXI-like protein At5g11420 Neighboring gene 26S proteasome regulatory subunit 8 homolog A Neighboring gene 3-ketoacyl-CoA synthase 11 Neighboring gene UDP-glycosyltransferase 73C3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in spliceosomal snRNP assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SMN complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4328675
    Names
    OSJNBb0056C19.23
    Os02g0205400
    P0544H11.39
    putative serine-threonine kinase receptor-associated protein
    serine-threonine kinase receptor-associated protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      5935389..5940792
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771426.3 → XP_015626912.1  uncharacterized protein LOC4328675

      UniProtKB/TrEMBL
      A0A0P0VG90, B8ADV1, Q67TT3, Q6Z6C8
      Conserved Domains (2) summary
      cd00200
      Location:14 → 298
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:66 → 100
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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