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    LOC4326935 dehydrin Rab25-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326935, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4326935
    Gene description
    dehydrin Rab25-like
    Locus tag
    OSNPB_010702500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    rDRP1; rab25
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    Genomic context

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    See LOC4326935 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (29711748..29712839)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (29123529..29124598)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4326934 Neighboring gene chaperone protein dnaJ 10 Neighboring gene myb-related protein Hv33 Neighboring gene nuclear poly(A) polymerase 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nucleotide sequence of a rice rab16 homologue gene. Kusano T, et al. Plant Mol Biol, 1992 Jan. PMID 1531030
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cold acclimation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to abscisic acid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to water deprivation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dehydrin Rab25
    Names
    Drought-resistant protein 1
    LOC_Os01g50700
    P0421H07.13
    dehydrin-like
    rab25 product

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001406293.1 → NP_001393222.1  dehydrin Rab25

      Status: VALIDATED

      Source sequence(s)
      AY333185
      UniProtKB/Swiss-Prot
      P30287, Q5N9R4, Q7E0Y0
      UniProtKB/TrEMBL
      Q0JK19

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      29711748..29712839
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P30287.2 GenPept UniProtKB/Swiss-Prot:P30287

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