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    LOC4343565 eukaryotic translation initiation factor 4G-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343565, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343565
    Gene description
    eukaryotic translation initiation factor 4G-like
    Locus tag
    OSNPB_070555200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    eIF4G; eIF-4G; OsJ_24703
    Expression
    Ubiquitous expression in flower buds (RPKM 41.0), flowers (RPKM 40.5) and 6 other tissues See more
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    Genomic context

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    See LOC4343565 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (22344109..22352277)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (22114933..22123113)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4343562 Neighboring gene uncharacterized LOC4343564 Neighboring gene uncharacterized LOC9267874 Neighboring gene uncharacterized LOC4343567

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of eukaryotic translation initiation factor 4F complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    eukaryotic translation initiation factor 4G
    Names
    Eukaryotic initiation factor 4F subunit p220
    LOC_Os07g36940
    OSJNBa0058I18.6
    eIF-4F p220 subunit
    putative eukaryotic translation initiation factor 4G

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422199.1 → NP_001409128.1  eukaryotic translation initiation factor 4G

      Status: VALIDATED

      Source sequence(s)
      AK058724, AK066706, AK069301, AK100968, AP014963
      UniProtKB/Swiss-Prot
      B9FXV5, Q0D5K1, Q69S49
      UniProtKB/TrEMBL
      D4N2J5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      22344109..22352277
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B9FXV5.2 GenPept UniProtKB/Swiss-Prot:B9FXV5

    Gene LinkOut

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