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    LOC4337227 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337227, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337227
    Gene description
    protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic
    Locus tag
    OSNPB_040650500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 13.6), flowers (RPKM 10.7) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (33662907..33665590)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (33147056..33150071)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene probable glucuronosyltransferase Os04g0650300 Neighboring gene flavonol 3-O-glucosyltransferase UGT89B1-like Neighboring gene small RNA degrading nuclease 1 Neighboring gene probable isoaspartyl peptidase/L-asparaginase 2 Neighboring gene D-3-phosphoglycerate dehydrogenase 3, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cytochrome b6f complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic
    Names
    Os04g0650500
    putative CCB4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      33662907..33665590
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781377.3 → XP_015636863.1  protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X1

      UniProtKB/TrEMBL
      B9FCV4, Q25AM8, Q7XMP9
      Conserved Domains (1) summary
      pfam11152
      Location:78 → 286
      CCB2_CCB4; Cofactor assembly of complex C subunit B, CCB2/CCB4

    2. XM_015781378.3 → XP_015636864.1  protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X2

      UniProtKB/TrEMBL
      Q25AM8
      Conserved Domains (1) summary
      pfam11152
      Location:77 → 285
      DUF2930; Protein of unknown function (DUF2930)

    3. XM_015781379.3 → XP_015636865.1  protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X3

      UniProtKB/TrEMBL
      Q25AM8
      Conserved Domains (1) summary
      pfam11152
      Location:76 → 284
      DUF2930; Protein of unknown function (DUF2930)
    Nucleotide Protein
    Heading Accession and Version

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