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    LOC4340001 protein TPX2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340001, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4340001
    Gene description
    protein TPX2
    Locus tag
    OSNPB_060130200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0493C11.2
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    Genomic context

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    See LOC4340001 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (1770699..1777209, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (1613342..1620200, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356867 Neighboring gene uncharacterized LOC136356868 Neighboring gene LRR receptor-like serine/threonine-protein kinase SIK1 Neighboring gene 1-aminocyclopropane-1-carboxylate synthase 6-like Neighboring gene peptidyl-prolyl cis-trans isomerase CYP18-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in activation of protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic spindle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of mitotic spindle organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear microtubule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in spindle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein TPX2
    Names
    Os06g0130200
    P0538C01.28

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      1770699..1777209 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785766.3 → XP_015641252.1  protein TPX2 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WS13, B8B2C0, B9FRB4, Q658G6
      Conserved Domains (1) summary
      pfam12214
      Location:260 → 390
      TPX2_importin; Cell cycle regulated microtubule associated protein

    2. XM_015785765.3 → XP_015641251.1  protein TPX2 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WS13, B8B2C0, B9FRB4, Q658G6
      Conserved Domains (1) summary
      pfam12214
      Location:260 → 390
      TPX2_importin; Cell cycle regulated microtubule associated protein

    3. XM_066311381.1 → XP_066167478.1  protein TPX2 isoform X2

      UniProtKB/TrEMBL
      B8B2C0, B9FRB4
    Nucleotide Protein
    Heading Accession and Version

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