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    LOC4328405 OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328405, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328405
    Gene description
    OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 2
    Locus tag
    OSNPB_020164800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1661_C12.24
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    Genomic context

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    See LOC4328405 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (3479276..3482763)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (3470539..3474137)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene agamous-like MADS-box protein AGL61 Neighboring gene uncharacterized LOC136355043 Neighboring gene pentatricopeptide repeat-containing protein At4g21065 Neighboring gene auxin response factor 6-like Neighboring gene uncharacterized LOC4328407

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum unfolded protein response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 2
    Names
    OSJNBa0023I17.7
    Os02g0164800
    ubiquitin thioesterase OTU1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      3479276..3482763
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768309.3 → XP_015623795.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 2

      UniProtKB/TrEMBL
      A2X1A0, A3A3H0
      Conserved Domains (1) summary
      COG5539
      Location:13 → 207
      COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version

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