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    LOC4334188 uncharacterized LOC4334188 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334188, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334188
    Gene description
    uncharacterized LOC4334188
    Locus tag
    OSNPB_030760700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 29.1), roots before flowering (RPKM 28.2) and 6 other tissues See more
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    Genomic context

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    See LOC4334188 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (32430957..32434093)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (31460436..31463570)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 81Q32 Neighboring gene cytochrome P450 81Q32 Neighboring gene TIP41-like protein Neighboring gene peamaclein Neighboring gene upstream activation factor subunit UAF30

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables aspartate-semialdehyde dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in isoleucine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lysine biosynthetic process via diaminopimelate IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in methionine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in threonine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4334188
    Names
    Os03g0760700
    aspartate-semialdehyde dehydrogenase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      32430957..32434093
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772891.2 → XP_015628377.1  uncharacterized protein LOC4334188

      UniProtKB/TrEMBL
      A0A0P0W3B7, B8AK88, Q93Y73
      Conserved Domains (1) summary
      PLN02383
      Location:32 → 374
      PLN02383; aspartate semialdehyde dehydrogenase
    Nucleotide Protein
    Heading Accession and Version

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