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    LOC4330057 uncharacterized LOC4330057 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330057, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4330057
    Gene description
    uncharacterized LOC4330057
    Locus tag
    OSNPB_020631200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 53.4), flowers (RPKM 19.9) and 6 other tissues See more
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    Genomic context

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    See LOC4330057 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (25242510..25256481, complement)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At2g24330 Neighboring gene uncharacterized LOC4330056 Neighboring gene regulator of nonsense transcripts UPF2 Neighboring gene two-component response regulator ORR11-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4330057
    Names
    B1250G12.9-1
    Os02g0631200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      25242510..25256481 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770845.2 → XP_015626331.1  uncharacterized protein LOC4330057

      UniProtKB/TrEMBL
      A0A0P0VLX2, A2X7H9, Q0DZC5
      Conserved Domains (1) summary
      pfam12579
      Location:224 → 257
      DUF3755; Protein of unknown function (DUF3755)

    2. XM_015770846.2 → XP_015626332.1  uncharacterized protein LOC4330057

      UniProtKB/TrEMBL
      A0A0P0VLX2, A2X7H9, Q0DZC5
      Conserved Domains (1) summary
      pfam12579
      Location:224 → 257
      DUF3755; Protein of unknown function (DUF3755)
    Nucleotide Protein
    Heading Accession and Version

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