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    LOC4332350 serine/arginine-rich splicing factor SR45a [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332350, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4332350
    Gene description
    serine/arginine-rich splicing factor SR45a
    Locus tag
    OSNPB_030265600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in mature seeds (RPKM 53.4), leaves before flowering (RPKM 20.4) and 6 other tissues See more
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    Genomic context

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    See LOC4332350 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (8767585..8770616, complement)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene 50S ribosomal protein L4, chloroplastic Neighboring gene coronatine-insensitive protein homolog 2-like Neighboring gene uncharacterized LOC4332351 Neighboring gene uncharacterized LOC4332352 Neighboring gene uncharacterized LOC4332353

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/arginine-rich splicing factor SR45a
    Names
    Os03g0265600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417471.1 → NP_001404400.1  serine/arginine-rich splicing factor SR45a

      Status: VALIDATED

      Source sequence(s)
      CB668110, CB668111, CB678875, CI158555
      UniProtKB/TrEMBL
      Q10NM2, Q10NM3

    RNA

    1. NR_184454.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      CB662871, CB668111, CB678875, CI158555

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      8767585..8770616 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777398.2 → XP_015632884.1  serine/arginine-rich splicing factor SR45a isoform X2

      UniProtKB/TrEMBL
      Q10NM3
      Conserved Domains (1) summary
      cd12382
      Location:36 → 115
      RRM_RBMX_like; RNA recognition motif in heterogeneous nuclear ribonucleoprotein G (hnRNP G), Y chromosome RNA recognition motif 1 (hRBMY), testis-specific heterogeneous nuclear ribonucleoprotein G-T (hnRNP G-T) and similar proteins

    2. XM_015777396.2 → XP_015632882.1  serine/arginine-rich splicing factor SR45a isoform X1

      UniProtKB/TrEMBL
      Q10NM2
      Conserved Domains (2) summary
      COG0724
      Location:2 → 226
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cl17169
      Location:44 → 119
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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